Researchers

Tom Fish

Research Software Engineer
About

Tom is a Research Software Engineer for Imaging. He has a background in Astrophysics and received an MSc by Research for work writing software to analyse simulations of galaxy cluster mergers. Following this he worked on software automation for correlative imaging at Diamond Light Source, developing software to tackle problems from microscope control to data analysis. Tom works on software automation to solve issues related to sample preparation, data collection, and data analysis for FIB-SEM. His interests lie in cross-disciplinary collaboration and enabling research through workflow optimisation.

Projects and Platforms

Digital Twin Cell

Creating a digital replica of a living cell enabling researchers to perform virtual experiments and gain valuable insights into cell biology.

Publications

Correlative cryo-imaging of the cellular universe with soft X-rays and laser light used to track F-actin structures in mammalian cells

Acta Crystallographica Section D Structural Biology

1 Dec 2021, Journal Article

DOI: 10.1107/S2059798321010329

Protocol for image registration of correlative soft X-ray tomography and super-resolution structured illumination microscopy images

STAR Protocols

Jun 2021, Journal Article

DOI: 10.1016/j.xpro.2021.100529

Sample preparation strategies for efficient correlation of 3D SIM and soft X-ray tomography data at cryogenic temperatures

Nature Protocols

Jun 2021, Journal Article

DOI: 10.1038/s41596-021-00522-4

Data-deposition protocols for correlative soft X-ray tomography and super-resolution structured illumination microscopy applications

STAR Protocols

Mar 2021, Journal Article

DOI: 10.1016/j.xpro.2020.100253

3D Correlative Cryo-Structured Illumination Fluorescence and Soft X-ray Microscopy Elucidates Reovirus Intracellular Release Pathway

Cell

Jul 2020, Journal Article

DOI: 10.1016/j.cell.2020.05.051

Correlative cryo-structured illumination fluorescence microscopy and soft X-ray tomography elucidates reovirus intracellular release pathway

14 Jan 2020, Preprint

DOI: 10.1101/2020.01.13.904623

A New Class of X-Ray Tails of Early-type Galaxies and Subclusters in Galaxy Clusters: Slingshot Tails versus Ram Pressure Stripped Tails

The Astrophysical Journal

1 Apr 2019, Journal Article

DOI: 10.3847/1538-4357/ab0c06

The Recent Growth History of the Fornax Cluster Derived from Simultaneous Sloshing and Gas Stripping: Simulating the Infall of NGC 1404

The Astrophysical Journal

Sep 2018, Journal Article

DOI: 10.3847/1538-4357/aadc0f